faq
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Table of Contents
FAQ for BLUPF90 programs
Input files
Data preparation program
Frequent mistakes in a parameter file for BLUPF90 programs
REML
- remlf90 (ver 1.76): EM algorithm
- airemlf90 (ver 1.99): Average Information REML + REMLF90 - Standard Errors (PDF)
Gibbs sampling
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances
- gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits
- gibbs2f90 (ver 1.76) read me
- gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances
- thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model
Post-Gibbs Analysis
postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs)
BLUP
blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions)
Accuracy
accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions)
Genomic Analysis
preGSf90 (ver 1.6) read me: Pre-analysis of genomic programs
faq.1337178052.txt.gz · Last modified: 2024/03/25 18:22 (external edit)