faq.renum_example
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faq.renum_example [2012/05/30 12:42] – created shogo | faq.renum_example [2018/10/18 15:50] – [Random regression model] shogo | ||
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1 2 | 1 2 | ||
</ | </ | ||
+ | ===== Random regression model ===== | ||
+ | < | ||
+ | DATAFILE | ||
+ | rrm.dat | ||
+ | TRAITS | ||
+ | 9 | ||
+ | FIELDS_PASSED TO OUTPUT | ||
+ | |||
+ | WEIGHT(S) | ||
+ | |||
+ | RESIDUAL_VARIANCE | ||
+ | 1 | ||
+ | EFFECT | ||
+ | 7 cross alpha | ||
+ | EFFECT | ||
+ | 2 cov | ||
+ | EFFECT | ||
+ | 3 cov | ||
+ | EFFECT | ||
+ | 4 cov | ||
+ | EFFECT | ||
+ | 5 cov | ||
+ | EFFECT | ||
+ | 6 cross alpha | ||
+ | RANDOM | ||
+ | animal | ||
+ | OPTIONAL | ||
+ | pe | ||
+ | FILE | ||
+ | rrm.ped | ||
+ | RANDOM_REGRESSION | ||
+ | data | ||
+ | RR_POSITION | ||
+ | 2 3 4 5 | ||
+ | </ | ||
+ | < | ||
+ | rrm.dat | ||
+ | 1 -1.00000 1.00000 -1.00000 1.00000 | ||
+ | 2 -0.77778 0.40741 -0.00960 -0.29249 | ||
+ | 3 -0.55556 -0.03704 0.40466 -0.36565 | ||
+ | 4 -0.33333 -0.33333 0.40741 0.01235 | ||
+ | 5 -0.11111 -0.48148 0.16324 0.32937 | ||
+ | 6 0.11111 -0.48148 -0.16324 0.32937 | ||
+ | 7 0.33333 -0.33333 -0.40741 0.01235 | ||
+ | 8 0.55556 -0.03704 -0.40466 -0.36565 | ||
+ | 9 0.77778 0.40741 0.00960 -0.29249 | ||
+ | 10 1.00000 1.00000 1.00000 1.00000 | ||
+ | : | ||
+ | : | ||
+ | : | ||
+ | : | ||
+ | : | ||
+ | : | ||
+ | </ | ||
+ | < | ||
+ | rrm.ped | ||
+ | 1 0 0 | ||
+ | 2 0 0 | ||
+ | 3 0 0 | ||
+ | 4 0 0 | ||
+ | 5 1 0 | ||
+ | 6 1 4 | ||
+ | 7 2 0 | ||
+ | 8 2 4 | ||
+ | 9 2 0 | ||
+ | 10 3 5 | ||
+ | </ | ||
+ | < | ||
+ | renf90.par | ||
+ | DATAFILE | ||
+ | | ||
+ | NUMBER_OF_TRAITS | ||
+ | 1 | ||
+ | NUMBER_OF_EFFECTS | ||
+ | 13 | ||
+ | OBSERVATION(S) | ||
+ | 1 | ||
+ | WEIGHT(S) | ||
+ | |||
+ | EFFECTS: POSITIONS_IN_DATAFILE NUMBER_OF_LEVELS TYPE_OF_EFFECT[EFFECT NESTED] | ||
+ | | ||
+ | 7 1 cov | ||
+ | 8 1 cov | ||
+ | 9 1 cov | ||
+ | 10 1 cov | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | RANDOM_RESIDUAL VALUES | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | FILE | ||
+ | renadd06.ped | ||
+ | (CO)VARIANCES | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | 10 11 12 13 | ||
+ | | ||
+ | | ||
+ | FILE | ||
+ | | ||
+ | (CO)VARIANCES | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | </ | ||
+ | |||
===== Maternal effect model ===== | ===== Maternal effect model ===== | ||
< | < |
faq.renum_example.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1