how_to_fit_haplotype_effects
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how_to_fit_haplotype_effects [2012/05/15 09:39] – andres | how_to_fit_haplotype_effects [2024/03/25 18:22] (current) – external edit 127.0.0.1 | ||
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- | __How to include haplotype effects in BLUPF90__ | + | ====How |
Including haplotypic effects is quite complicated because, for each record // | Including haplotypic effects is quite complicated because, for each record // | ||
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//y = μ + h< | //y = μ + h< | ||
- | Where //h// is an haplotypic effect (3 levels) and t is a cross-classified effect (5 levels). I have prepared a small example. | + | Where //h// is an haplotypic effect (3 levels) and //t// is a cross-classified effect (5 levels). I have prepared a small example. |
< | < | ||
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The first column is //y//, the second //µ//, 3rd-5th is the number of copies of the haplotype of interest, the 6th column is the effect //t// with 5 levels. The “1 2 3” indicate which is the haplotype associated to the number of copies in 3rd-5th columns. Note, for instance, that the 5th record has 2 copies of the third haplotype. The par file is thus: | The first column is //y//, the second //µ//, 3rd-5th is the number of copies of the haplotype of interest, the 6th column is the effect //t// with 5 levels. The “1 2 3” indicate which is the haplotype associated to the number of copies in 3rd-5th columns. Note, for instance, that the 5th record has 2 copies of the third haplotype. The par file is thus: | ||
- | < | + | < |
DATAFILE | DATAFILE | ||
data | data |
how_to_fit_haplotype_effects.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1