Differences

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--- readme.aireml [2019/07/22 22:58] – [Options] shogo
+++ readme.aireml [2020/11/12 20:15] – [Options] shogo
@@ Line 9: / Line 9: @@
 ===== Options =====
 <file>
-OPTION conv_crit 1d-12
+OPTION conv_crit 1d-10
 </file>
-Convergence criterion (default 1d-10).
+Convergence criterion (default 1d-12).
 <file>
-OPTION maxrounds 1000
+OPTION maxrounds n
 </file>
-Maximum rounds (default 5000). When the number = 0, the program calculates BLUP without iterating REML and some statistics (-2logL, AIC, SE for (co)variances, ...).
+Maximum rounds (default 5000). When n = 0, the program calculates BLUP without iterating REML and provides some statistics (-2logL, AIC, SE for (co)variances, ...).
 <file>
-OPTION EM-REML 10
+OPTION EM-REML n
 </file>
-Run EM-REML (REMLF90) for first 10 rounds to get initial variances within the parameter space (default 0).
+Run EM-REML (REMLF90) for first n rounds to get initial starting variances for AIREMLF90 within the parameter space (default 0). With n is large (e.g., 1000, 10000, ....), AIREMLF90 runs as REMLF90 until convergence, and then switching back to AIREMLF90.
 <file>
 OPTION use_yams
@@ Line 57: / Line 57: @@
 OPTION hetres_pos 10 11
 </file>
-Specify the column position of (two) covariables in the data file.
+Specify the column positions of (two) covariables in the data file.
 <file>
 OPTION hetres_pol 4.0 0.1 0.1
@@ Line 72: / Line 72: @@
 OPTION hetres_pos 10 11 12 13
 </file>
-Specify the position of covariables (trait first).
+Specify the column positions of covariables (trait first) in the data file.
 "10 10" or "10 11" could be linear for first and second traits.\\
 "11 11" or "12 13" could be quadratic.