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--- readme.aireml [2019/07/22 23:00] – [Options] shogo
+++ readme.aireml [2020/11/12 20:15] – [Options] shogo
@@ Line 9: / Line 9: @@
 ===== Options =====
 <file>
-OPTION conv_crit 1d-12
+OPTION conv_crit 1d-10
 </file>
-Convergence criterion (default 1d-10).
+Convergence criterion (default 1d-12).
 <file>
-OPTION maxrounds 1000
+OPTION maxrounds n
 </file>
-Maximum rounds (default 5000). When the number = 0, the program calculates BLUP without iterating REML and some statistics (-2logL, AIC, SE for (co)variances, ...).
+Maximum rounds (default 5000). When n = 0, the program calculates BLUP without iterating REML and provides some statistics (-2logL, AIC, SE for (co)variances, ...).
 <file>
-OPTION EM-REML 10
+OPTION EM-REML n
 </file>
-Run EM-REML (REMLF90) for first 10 rounds to get initial variances within the parameter space (default 0).
+Run EM-REML (REMLF90) for first n rounds to get initial starting variances for AIREMLF90 within the parameter space (default 0). With n is large (e.g., 1000, 10000, ....), AIREMLF90 runs as REMLF90 until convergence, and then switching back to AIREMLF90.
 <file>
 OPTION use_yams