readme.gibbs2
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readme.gibbs2 [2018/04/12 20:27] – [Running] shogo | readme.gibbs2 [2024/03/25 18:22] (current) – external edit 127.0.0.1 | ||
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You can run as | You can run as | ||
- | < | + | < |
in which case you give the number of rounds, the burn-in, the storage of samples in the file '' | in which case you give the number of rounds, the burn-in, the storage of samples in the file '' | ||
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OPTION fixed_var all 1 2 3 | OPTION fixed_var all 1 2 3 | ||
</ | </ | ||
- | All solutions and posterior means and SD for effects | + | All solutions and posterior means and SD for effects |
< | < | ||
OPTION fixed_var mean 1 2 3 | OPTION fixed_var mean 1 2 3 | ||
</ | </ | ||
- | Posterior means and SD for effects1, 2, and 3 in " | + | Posterior means and SD for effects 1, 2, and 3 in " |
< | < | ||
OPTION solution all 1 2 3 | OPTION solution all 1 2 3 | ||
</ | </ | ||
Caution: this option will create a huge output solution file when you run many rounds and/or use a large model. | Caution: this option will create a huge output solution file when you run many rounds and/or use a large model. | ||
- | All solutions and posterior means and SD for effects1, 2, and 3 are stored in " | + | All solutions and posterior means and SD for effects 1, 2, and 3 are stored in " |
< | < | ||
OPTION solution mean 1 2 3 | OPTION solution mean 1 2 3 | ||
</ | </ | ||
- | Caution: this option will create a huge output solution file when you run many rounds and/or use a large model. | + | Posterior means and SD for effects 1, 2, and 3 in " |
- | Posterior means and SD for effects1, 2, and 3 in " | + | |
< | < | ||
OPTION cont 10000 | OPTION cont 10000 | ||
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OPTION prior eff1 db1 eff2 db2 ... effn dbn -1 dbres\\ | OPTION prior eff1 db1 eff2 db2 ... effn dbn -1 dbres\\ | ||
effx correspond to the effect number and dbx to the degree of belief for this random effect, -1 corresponds to the degree of belief of the residual variance.\\ | effx correspond to the effect number and dbx to the degree of belief for this random effect, -1 corresponds to the degree of belief of the residual variance.\\ | ||
- | In this example 2 is the degree of belief for the 5th effect, and 5 is the degree of belief for the residual.\\ | + | In this example, 2 is the degree of belief for the 5th effect, and 5 is the degree of belief for the residual.\\ |
+ | If the model has correlated random effects, specify only the first effect.\\ | ||
< | < | ||
OPTION seed 123 321 | OPTION seed 123 321 |
readme.gibbs2.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1