readme.illumina2pregs
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readme.illumina2pregs [2018/05/21 15:47] – [Output files] ignacio | readme.illumina2pregs [2019/09/27 00:17] – [Input files] ignacio | ||
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- | < | + | < |
- | | + | Set GC cutoff (thr) for exclude call (default from GenomeStudio 0.15) |
- | < | + | |
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< | < | ||
Set the maximun length to store alphanumeric IDs (default 10) | Set the maximun length to store alphanumeric IDs (default 10) | ||
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12 NormID | 12 NormID | ||
- | '' | + | '' |
+ | The following fields should be present in the Final Report file, Any order of columns is supported. | ||
+ | Column positions will be assumed based on the keywords: | ||
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+ | Optional fields: | ||
+ | GC Score | ||
- | 1 SNP_Name | ||
- | 2 Sample ID | ||
- | 3 Allele1 - Forward | ||
- | 4 Allele2 - Forward | ||
- | 5 Allele1 - Top | ||
- | 6 Allele2 - Top | ||
- | 7 Allele2 - AB | ||
- | 8 Allele1 - AB | ||
- | 9 GC Score | ||
- | 10 X | ||
- | 11 Y | ||
- | ** this is the default column position but you can use '' | ||
====Output files==== | ====Output files==== | ||
readme.illumina2pregs.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1