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--- readme.illumina2pregs [2019/09/27 00:11] – [Optional Arguments] ignacio
+++ readme.illumina2pregs [2019/09/27 00:17] – [Input files] ignacio
@@ Line 54: / Line 54: @@
 NormID
-''FinalReport.txt''
+''FinalReport.txt''.
+The following fields should be present in the Final Report file, Any order of columns is supported.
+Column positions will be assumed based on the keywords:
+   SNP_Name
+   Sample ID
+   Allele2 - AB
+   Allele1 - AB
+Optional fields:
+   GC Score
-SNP_Name
-Sample ID
-Allele1 - Forward
-Allele2 - Forward
-Allele1 - Top
-Allele2 - Top
-Allele2 - AB
-Allele1 - AB
-GC Score
-X
-Y
-** this is the default column position but you can use ''--codeab'' argument for change it the column for
 ====Output files====