readme.illumina2pregs
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| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
| readme.illumina2pregs [2019/09/27 00:17] – [Input files] ignacio | readme.illumina2pregs [2020/08/25 02:28] – [Optional Arguments] ignacio | ||
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| Line 34: | Line 34: | ||
| Set the maximun length to store alphanumeric IDs (default 10) | Set the maximun length to store alphanumeric IDs (default 10) | ||
| < | < | ||
| - | Set a file name for output SNP file (default snps2pregs) | + | Set a file name for the output |
| + | < | ||
| + | Set a file name for the output of the MAP file (default snpp_map) | ||
| =====File formats===== | =====File formats===== | ||
| ====Input files==== | ====Input files==== | ||
| - | '' | + | '' |
| - | 1 Index | + | |
| - | 2 Name | + | The following fields should be present in the SNP_Map.txt file, |
| - | 3 Chromosome | + | |
| - | 4 Position | + | Any order of columns is supported. |
| - | 5 GenTrain | + | |
| - | 6 Score | + | Column positions will be assumed based on the keywords: |
| - | 7 SNP | + | * Name |
| - | 8 ILMN | + | |
| - | 9 Strand | + | |
| - | 10 Customer | + | Other fields will be ignored |
| - | 11 Strand | + | |
| - | | + | |
| + | '' | ||
| - | '' | ||
| The following fields should be present in the Final Report file, Any order of columns is supported. | The following fields should be present in the Final Report file, Any order of columns is supported. | ||
| + | |||
| Column positions will be assumed based on the keywords: | Column positions will be assumed based on the keywords: | ||
| - | SNP_Name | + | * SNP_Name |
| - | | + | |
| - | | + | |
| - | | + | |
| Optional fields: | Optional fields: | ||
| - | GC Score | + | * GC Score |
| + | Other fields will be ignored. | ||
| ====Output files==== | ====Output files==== | ||
readme.illumina2pregs.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1