readme.illumina2pregs
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readme.illumina2pregs [2019/09/27 00:36] – [Input files] ignacio | readme.illumina2pregs [2020/12/09 16:57] – [Output files] ignacio | ||
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Set GC cutoff (thr) for exclude call (default from GenomeStudio 0.15) | Set GC cutoff (thr) for exclude call (default from GenomeStudio 0.15) | ||
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Set the maximun length to store alphanumeric IDs (default 10) | Set the maximun length to store alphanumeric IDs (default 10) | ||
< | < | ||
- | Set a file name for output SNP file (default snps2pregs) | + | Set a file name for the output |
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+ | Set a file name for the output of the MAP file (default snp_map) | ||
=====File formats===== | =====File formats===== | ||
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'' | '' | ||
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2 chromosome | 2 chromosome | ||
3 position | 3 position | ||
- | | + | 4 index in original SNP_Map.txt |
- | | + | |
SNP without defined position (CHR = 0) in the SNP_Map.txt will be located in a new CHR 32 in the output snp_map, but still with 0 position. | SNP without defined position (CHR = 0) in the SNP_Map.txt will be located in a new CHR 32 in the output snp_map, but still with 0 position. |
readme.illumina2pregs.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1