readme.pcg2
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| readme.pcg2 [2013/07/17 16:37] – shogo | readme.pcg2 [2019/05/28 19:23] – [Options] shogo | ||
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| OPTION conv_crit 1e-12 | OPTION conv_crit 1e-12 | ||
| </ | </ | ||
| - | Set convergence | + | Set a convergence |
| < | < | ||
| OPTION maxrounds 10000 | OPTION maxrounds 10000 | ||
| </ | </ | ||
| - | Set maximum number of rounds (default | + | Set maximum number of rounds (default |
| < | < | ||
| OPTION blksize 3 | OPTION blksize 3 | ||
| </ | </ | ||
| - | Set block size for preconditioner (default 1). | + | Set a block size for preconditioner (default 1) to accelerate convergence (usually 2 to 5 times faster). For a multiple-trait model, the number can be the number of traits. |
| < | < | ||
| OPTION init_eq 10 | OPTION init_eq 10 | ||
| </ | </ | ||
| - | Set the number of effects to be solved directly (default=0). | + | Set the number of effects to be solved directly (default=0) to accelerate convergence (usually, 10% to 50% faster). |
| < | < | ||
| OPTION solv_method FSPAK | OPTION solv_method FSPAK | ||
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| OPTION tol 1d-12 | OPTION tol 1d-12 | ||
| </ | </ | ||
| - | Tolerance to get a positive definite matrix (default=1d-12). | + | Tolerance to get a positive definite |
| < | < | ||
| OPTION residual | OPTION residual | ||
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| OPTION avgeps 50 | OPTION avgeps 50 | ||
| </ | </ | ||
| - | Using the last 50 average eps for convergence. | + | Using the last 50 average eps for convergence, |
| < | < | ||
| OPTION cont 1 | OPTION cont 1 | ||
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| To restart the program from the previous solutions. | To restart the program from the previous solutions. | ||
| < | < | ||
| - | OPTION missing -1 | + | OPTION missing -999 |
| </ | </ | ||
| - | Set the missing value (default 0). | + | Set the missing value (default 0) in integer. |
| < | < | ||
| OPTION restart 100 | OPTION restart 100 | ||
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| \\ | \\ | ||
| //For information on availability of BLUP90IOD, please contact Ignacy Misztal (ignacy@uga.edu) at the University of Georgia.// | //For information on availability of BLUP90IOD, please contact Ignacy Misztal (ignacy@uga.edu) at the University of Georgia.// | ||
| - | |||
readme.pcg2.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1