readme.pcg2
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BLUP90IOD2
The original program was written by Shogo Tsuruta in 1999.
Summary
BLUP90IOD2 is a BLUP program for solving a large number of mixed model equations, using preconditioning conjugate gradient (PCG).
Options
OPTION conv_crit 1e-12
Set convergence criteria (deault 1e-12).
OPTION maxrounds 10000
Set maximum number of rounds (default 1000).
OPTION blksize 3
Set block size for preconditioner (default 1).
OPTION init_eq 10
set the number of effects to be solved directly (default=0)
OPTION cont 1
to restart the program from the previous solutions
OPTION missing -1
set the missing value (default 0).
OPTION restart 100
set the number of iteration to recompute residuals (default=100)
OPTION SNP_file snps
implement one-step genomic selection updating animal effects with genomic relationship matrix (H-Inverse)
For information on availability of BLUP90IOD, please contact Ignacy Misztal (ignacy@uga.edu) at the University of Georgia.
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