readme.pedictf90
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— | readme.pedictf90 [2018/07/12 21:50] – created andres | ||
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+ | **predictf90** | ||
+ | This is program is used to do cross-validations. It reads a blupf90 parameter file, a solutions file | ||
+ | and a data file | ||
+ | It needs '' | ||
+ | It computes | ||
+ | y_hat = sum of estimates of the included effects | ||
+ | y_star = y corrected by the other (not included) effects | ||
+ | residual = y - included effects (not a true residual) | ||
+ | |||
+ | For instance consider | ||
+ | |||
+ | y = herd + age + animal + e | ||
+ | |||
+ | with '' | ||
+ | |||
+ | y_hat = animal_hat | ||
+ | ystar = y - herd_hat - age_hat | ||
+ | Which makes cor(y_hat, | ||
+ | |||
+ | it outputs the correlation between y_hat and y_star, for instance cor(ystar, | ||
+ | |||
+ | and outputs these columns into a file, together with animal id (if there is animal in the model) or record number (if not) | ||
+ | |||
+ | In addition, if animal effect is in the model, it produces a file with ebvs from the solutions file. |