readme.pregsf90
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readme.pregsf90 [2019/07/26 21:55] – [Input files] ignacio | readme.pregsf90 [2019/07/26 21:57] – [Input files] ignacio | ||
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//SNP_ID// - identification of the SNP (alphanumeric) \\ | //SNP_ID// - identification of the SNP (alphanumeric) \\ | ||
//CHR// - chromosome number (numeric), starting from 1 \\ | //CHR// - chromosome number (numeric), starting from 1 \\ | ||
- | //POS// - position | + | //POS// - position bp (numeric) \\ |
Extra columns are possible \\ | Extra columns are possible \\ | ||
Line 671: | Line 671: | ||
OPTION readGmA22 [file] | OPTION readGmA22 [file] | ||
</ | </ | ||
+ | |||
+ | =====DEPRECATED OPTIONS===== | ||
+ | < | ||
+ | Read SNP map information from //file//.\\ | ||
+ | |||
+ | Useful for check for Mendelian conflicts and HWE (with also '' | ||
+ | |||
+ | Format, all numeric variables: //snp order , chromosome, position// (bp). | ||
+ | |||
+ | //snp order// corresponds to the index number of the snp, in the sorted map by chromosome and position | ||
+ | |||
+ | |||
+ | // | ||
+ | |||
+ | First line in file corresponds to first SNP in genotype file, and so on. | ||
+ | |||
+ | Other alphanumeric field are optional. | ||
+ | |||
+ | If '' | ||
+ |
readme.pregsf90.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1