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| readme.renumf90 [2018/04/09 23:33] – [Fields in the parameter file] shogo | readme.renumf90 [2018/05/30 17:51] – yutaka |
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| </file> | </file> |
| The data file is f1 | The data file is f1 |
| | |
| | <file> |
| | SKIP_HEADER |
| | n |
| | </file> |
| | This is optional. It skips the first n lines as header in the data file. |
| |
| <file> | <file> |
| |
| //fped// specifies the pedigree file | //fped// specifies the pedigree file |
| | |
| | <file> |
| | SKIP_HEADER |
| | n |
| | </file> |
| | This is optional. It skips the first n lines as header in the pedigree file. |
| |
| <file> | <file> |
| * 'pedigree' - the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID | * 'pedigree' - the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID |
| * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs | * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs |
| | |
| | <file> |
| | FIXED_REGRESSION |
| | r_type |
| | </file> |
| | It is the same as ''RANDOM_REGRESSION'' (see the explanation below) but it is effective only for fixed effects. |
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| <file> | <file> |
