Differences

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--- readme.renumf90 [2018/04/09 23:33] – [Fields in the parameter file] shogo
+++ readme.renumf90 [2018/06/05 23:50] – [Options] dani
@@ Line 47: / Line 47: @@
 </file>
 The data file is f1
+<file>
+SKIP_HEADER
+n
+</file>
+This is optional. It skips the first n lines as header in the data file.
 <file>
@@ Line 123: / Line 129: @@
  //fped// specifies the pedigree file
+<file>
+SKIP_HEADER
+n
+</file>
+This is optional. It skips the first n lines as header in the pedigree file.
 <file>
@@ Line 216: / Line 228: @@
   * 'pedigree' - the program computes inbreeding coefficients with Meuwissen and Luo (1992) using the pedigree to be saved in renaddxx.ped; calculated inbreeding coefficients will be saved in a file "renf90.inb" with the original ID
   * 'file' - the program reads inbreeding coefficients from an external file. You should put the filename after 'file' e.g. 'file inbreeding.txt'. The file has at least 2 columns: original_ID and inbreeding value (from 0.0 to 1.0). The program just skips unnecessary IDs
+<file>
+FIXED_REGRESSION
+r_type
+</file>
+It is the same as ''RANDOM_REGRESSION'' (see the explanation below) but it is effective only for fixed effects.
 <file>
@@ Line 304: / Line 322: @@
 parameters used to read the input file:
- - the default size of character fields
+ - the default size of character fields (default = 20)
 <file>
 OPTION alpha_size nn
@@ Line 310: / Line 328: @@
 where //nn// is the new size.
- - the size of th record length
+ - the size of th record length (default = 800)
 <file>
 OPTION max_string_readline nn
@@ Line 316: / Line 334: @@
 where //nn// is the new size.
- - the maximun number of fields
+ - the maximun number of fields (default = 100)
 <file>
 OPTION max_field_readline nn