readme.renumf90
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readme.renumf90 [2018/05/18 23:36] – yutaka | readme.renumf90 [2020/04/21 05:13] – yutaka | ||
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</ | </ | ||
The data file is f1 | The data file is f1 | ||
+ | |||
+ | < | ||
+ | SKIP_HEADER | ||
+ | n | ||
+ | </ | ||
+ | This is optional. It skips the first n lines as header in the data file. | ||
< | < | ||
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// | // | ||
+ | |||
+ | < | ||
+ | SKIP_HEADER | ||
+ | n | ||
+ | </ | ||
+ | This is optional. It skips the first n lines as header in the pedigree file. | ||
< | < | ||
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* if t is ' | * if t is ' | ||
+ | |||
+ | * There are the other values for t: ' | ||
+ | |||
< | < | ||
INBREEDING | INBREEDING | ||
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==== User-defined UPG code ==== | ==== User-defined UPG code ==== | ||
- | The program accepts the following keywords in '' | + | The program accepts |
+ | With one of these options, the program looks at a particular column in the pedigree file as a group code and use it for assigning the UPG code. If an animal has a missing parent, the program assigns an UPG code based on the group code. | ||
- | UPG_TYPE | + | * '' |
- | group | + | * '' |
- | + | * '' | |
- | or | + | |
- | + | ||
- | UPG_TYPE | + | |
- | group_unisex | + | |
- | With this option, the program looks at a particular column in the pedigree file as a group code and saves it. If an animal has a missing parent, the program assigns an UPG code according to the group code. If you want to assign separate UPGs by the parent's sex (sire or dam), use '' | + | For '' |
- | + | ||
- | The column in the pedigree file is specified with the 6th item in '' | + | |
FILE_POS | FILE_POS | ||
1 2 3 0 0 5 | 1 2 3 0 0 5 | ||
- | The program now accept 3 items, 5 items, or 6 items in '' | + | For '' |
+ | |||
+ | FILE_POS | ||
+ | 1 2 3 0 0 5 6 | ||
+ | The program now accept 3, 5, 6, or 7 items in '' | ||
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parameters used to read the input file: | parameters used to read the input file: | ||
- | - the default size of character fields | + | - the default size of character fields |
< | < | ||
OPTION alpha_size nn | OPTION alpha_size nn | ||
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where //nn// is the new size. | where //nn// is the new size. | ||
- | - the size of th record length | + | - the size of th record length |
< | < | ||
OPTION max_string_readline nn | OPTION max_string_readline nn | ||
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where //nn// is the new size. | where //nn// is the new size. | ||
- | - the maximun number of fields | + | - the maximun number of fields |
< | < | ||
OPTION max_field_readline nn | OPTION max_field_readline nn |
readme.renumf90.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1