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--- readme.thr1pcg [2016/08/03 20:00] – [Summary] dani
+++ readme.thr1pcg [2016/09/08 19:54] – [Options] shogo
@@ Line 12: / Line 12: @@
 CBLUP90IOD2 supports models  with one categorical trait and multiple linear traits. Thresholds are computed but none of the variances is. Memory requirements are about 56 bytes per equation.
-The first trait must be categorical and first record should not be missing.
+The first trait must be categorical and not be missing.
 ===== Options =====
@@ Line 34: / Line 34: @@
 OPTION cont
 </file>
-Keep the last solutions and residuals for restart.
+Keep the last solutions and residuals for restart. When the program does not converge, you will have "solutions_rsd". This option requires this file for restart.
 <file>
 OPTION cont 1
@@ Line 46: / Line 46: @@
 OPTION avgeps
 </file>
-Use the average eps / PCG rounds for convergence.
+Use the average eps / PCG rounds for convergence. With this option, solutions will be more stable.
 <file>
 OPTION SNP_file snp