Differences

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--- readme.thrgibbs1 [2018/05/31 04:41] – [Options] shogo
+++ readme.thrgibbs1 [2019/03/29 23:20] – [Options] shogo
@@ Line 46: / Line 46: @@
 OPTION solution mean
 </file>
-Only posterior means and SD for solutions are calculated for all effects in "final_solutions" while sampling (co)variances.
+Only posterior means and SD for solutions are calculated for all effects in "final_solutions" while sampling (co)variances. This option is not recommended to use unless the burn-in is known.
 <file>
 OPTION solution mean 1 2 3
 </file>
-Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in "final_solutions" while sampling (co)variances.
+Only posterior means and SD for solutions are calculated for effects 1, 2, and 3 in "final_solutions" while sampling (co)variances. This option is not recommended to use unless the burn-in is known.
 <file>
 OPTION save_halfway_samples 5000
 </file>
 The program saves every "5000" samples to restart or recover the job right after the last saved samples. It is useful when the program accidentally stopped.
-<file>
 <file>
 OPTION cont 10000
@@ Line 79: / Line 78: @@
 OPTION residual 1
 </file>
-Set the residual variance = 1 for categorical traits. For binary traits, the residual variance is automatically set to 1, so no need to use this option.
+The residual variance can be set to 1 but not necessary for categorical traits more than 2 categories. For binary traits, the residual variance is automatically set to 1, so no need to use this option.
 <file>
 OPTION pos_def x.x