BLUPF90

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FAQ for BLUPF90 programs Input files

  data
  pedigree

Data preparation program

  renumf90 (ver 1.92) read me
  examples 

Frequent mistakes in a parameter file for BLUPF90 programs

  parameter files for various models
  examples 

REML

  remlf90 (ver 1.76) read me: EM algorithm - PDF
  airemlf90 (ver 1.99) read me: Average Information REML + REMLF90 - Standard Errors (PDF) 

Gibbs sampling OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances

  gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits
  gibbs2f90 (ver 1.76) read me
  gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances
  thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model 

Post-Gibbs Analysis

  postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) 

BLUP

  blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF
  blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions)
  cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) 

Accuracy

  accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) 

Genomic Analysis

  preGSf90 (ver 1.6) read me: For a pre-analysis of genomic programs