Differences

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--- to_do [2016/09/30 19:21] – andres
+++ to_do [2017/07/05 21:21] – ignacy
@@ Line 7: / Line 7: @@
   - Plain text readable file ''gibbs_samples'' with colnames ''R11 R12 ... G11_11 G12_11...'' (postgibbsf90 is not easy and graphs do not work in most computers)
   - DONE: use ''get_command_argument()'' in order not to use ''echo file.par | blupf90''. Now one can use ''blupf90 file.par'' for all software
-  - DONE for gibbs1f90, gibbs2f90, gibbs3f90 : use ''getarg'' to pass gibbs arguments: ''gibbs2f90 mygibbs.par --rounds 10000 --burnin 1000 --thin 10''
+  - DONE for gibbs1f90, gibbs2f90, gibbs3f90 : use ''getarg'' to pass gibbs arguments: ''gibbs2f90 mygibbs.par --rounds 10000 --burnin 1000 --thin 10 --thinprint 20''
   - DONE: informative help in ''inbupgf90'': sends to wiki
   - DONE: use method 2 (in memory) as default in ''inbupgf90'' : done
@@ Line 17: / Line 17: @@
   - ''OPTION skip pedfile n'' to skip
   - DONE for gibbs1f90, gibbs2f90, gibbs3f90 : allow all missing in ''gibbs*f90'' (in order not to edit files !!)
+== Bigger things ==
+  - Options for sampling variances for GWAS. Current option gives pretty good Manhattan plots, But accuracies are improved with large but not small QTLs, and the iteration diverges.  New options could mimic other methods where all SNP effects are sampled simultaneously, such as NonlinearA or FastBayesA.
+  - GUI for basic models