BLUPF90

This is an old revision of the document!

idsol is postnumf90 but is not really well documented
DONE: Open all files with status=old to avoid creating new empty file (cryptic error on output)
Plain text readable file gibbs_samples with colnames R11 R12 … G11_11 G12_11… (postgibbsf90 is not easy and graphs do not work in most computers)
DONE: use get_command_argument() in order not to use echo file.par | blupf90. Now one can use blupf90 file.par for all software
DONE for gibbs1f90, gibbs2f90, gibbs3f90 : use getarg to pass gibbs arguments: gibbs2f90 mygibbs.par –rounds 10000 –burnin 1000 –thin 10 –thinprint 20
DONE: informative help in inbupgf90: sends to wiki
DONE: use method 2 (in memory) as default in inbupgf90 : done
in several applications UPGs are conceived to come at the end of the renumbered pedigree. This is undocumented.

Do A^-1 with consideration of inbreeding unless requested not to
OPTION skip datafile n to skip n lines (possibly colnames)
OPTION skip pedfile n to skip
DONE for gibbs1f90, gibbs2f90, gibbs3f90 : allow all missing in gibbs*f90 (in order not to edit files !!)