Differences

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--- faq [2012/05/10 19:48] – created ignacy
+++ faq [2012/05/16 14:20] – shogo
@@ Line 1: / Line 1: @@
-FAQ for BLUPF90 programs
+======  FAQ for BLUPF90 programs ======
-Input files
-    data
+==== Input files ====
-    pedigree
-Data preparation program
-    renumf90 (ver 1.92) read me
+      * [[http://nce.ads.uga.edu/html/projects/FAQ_data.html|data]]
-    examples
+      * [[http://nce.ads.uga.edu/html/projects/FAQ_pedigree.html|pedigree]]
-Frequent mistakes in a parameter file for BLUPF90 programs
+==== Data preparation program ====
-    parameter files for various models
+   * [[http://nce.ads.uga.edu/html/projects/FAQ_renum.html|renumf90 (ver 1.92)]]
-    examples
+   * [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]]
-REML
+==== Frequent mistakes in a parameter file for BLUPF90 programs ====
-    remlf90 (ver 1.76) read me: EM algorithm - PDF
+   * [[http://nce.ads.uga.edu/html/projects/FAQ_param.html|parameter files for various models]]
-    airemlf90 (ver 1.99) read me: Average Information REML + REMLF90 - Standard Errors (PDF)
+   * [[http://nce.ads.uga.edu/html/projects/FAQ_parameter.html|examples]]
-Gibbs sampling
+=== REML ===
+    * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|remlf90 (ver 1.76)]]: EM algorithm
+    * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|airemlf90 (ver 1.99)]]: Average Information REML + REMLF90 - [[http://nce.ads.uga.edu/html/projects/AI_SE.pdf|Standard Errors (PDF)]]
+=== Gibbs sampling ===
 OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances
-    gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits
+    * gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits
-    gibbs2f90 (ver 1.76) read me
+    * gibbs2f90 (ver 1.76) read me
-    gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances
+    * gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances
-    thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model
+    * thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model
-Post-Gibbs Analysis
+=== Post-Gibbs Analysis ===
     postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs)
-BLUP
+=== BLUP ===
     blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF