| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision |
| faq [2012/05/28 13:45] – shogo | faq [2012/05/28 14:31] – ignacio |
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| ==== Data preparation program ==== | ==== Data preparation program ==== |
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| * [[http://nce.ads.uga.edu/html/projects/FAQ_renum.html|renumf90 (ver 1.98)]] | * [[[[readme.renumf90|renumf90]] |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_para_renum.html|examples]] |
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| ==== REML ==== | ==== REML ==== |
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| * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|remlf90 (ver 1.76)]]: EM algorithm | * [[readme.reml|remlf90]]: EM algorithm |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_aireml.html|airemlf90 (ver 1.101)]]: Average Information REML + REMLF90 - [[http://nce.ads.uga.edu/html/projects/AI_SE.pdf|Standard Errors (PDF)]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_reml.html|remlf90 (ver 1.76)]] |
| | * [[readme.aireml|airemlf90]]: Average Information REML + REMLF90 |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_aireml.html|airemlf90 (ver 1.101)]] - [[http://nce.ads.uga.edu/html/projects/AI_SE.pdf|Standard Errors (PDF)]] |
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| ==== Gibbs sampling ==== | ==== Gibbs sampler ==== |
| OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances |
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| * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs1.html|gibbs1f90 (ver 1.43)]]: Faster than GIBBS2F90 without missing traits | * [[readme.gibbs1|gibbs1f90]]: Faster than GIBBS2F90 without missing traits |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs1.html|gibbs1f90 (ver 1.43)]] |
| | * [[readme.gibbs2|gibbs2f90]]: |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs2.html|gibbs2f90 (ver 1.81)]] | * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs2.html|gibbs2f90 (ver 1.81)]] |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs3.html|gibbs3f90 (ver 1.79)]]: Heterogeneous residual variances | * [[readme.gibbs3|gibbs3f90]]: Heterogeneous residual variances |
| * [[http://nce.ads.uga.edu/html/projects/FAQ_thrgibbs1.html|thrgibbs1f90(b) (ver 2.102)]]: Threshold model + linear model | * [[http://nce.ads.uga.edu/html/projects/FAQ_gibbs3.html|gibbs3f90 (ver 1.79)]] |
| | * [[readme.thrgibbs1|thrgibbs1f90]]: Threshold model + linear model |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_thrgibbs1.html|thrgibbs1f90(b) (ver 2.102)]] |
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| ==== Post-Gibbs Analysis ==== | ==== Post-Gibbs Analysis ==== |
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| * [[http://nce.ads.uga.edu/html/projects/FAQ_postgibbs.html|postgibbsf90 (ver 3.04)]]: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | * [[readme.postgibbs|postgibbsf90]]: Statistics and graphics for post-Gibbs analysis (use postgibbsold for old Gibbs sampler programs) |
| | * [[http://nce.ads.uga.edu/html/projects/FAQ_postgibbs.html|postgibbsf90 (ver 3.04)]] |
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| ==== BLUP ==== | ==== BLUP ==== |
