faq
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Table of Contents
FAQ for BLUPF90 programs
Input files
Data preparation program
Frequent mistakes in a parameter file for BLUPF90 programs
REML
- remlf90 (ver 1.76): EM algorithm
- airemlf90 (ver 1.101): Average Information REML + REMLF90 - Standard Errors (PDF)
Gibbs sampling
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances
- gibbs1f90 (ver 1.43): Faster than GIBBS2F90 without missing traits
- gibbs3f90 (ver 1.79): Heterogeneous residual variances
- thrgibbs1f90(b) (ver 2.102): Threshold model + linear model
Post-Gibbs Analysis
- postgibbsf90 (ver 3.04): Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs)
BLUP
- blupf90: BLUP with SOR, FSPAK or PCG
- blup90iod2: BLUP for a large number of equations (available only under some conditions)
- cblup90iod: BLUP with threshold model + linear model for a large number of equations (available only under some conditions)
Accuracy
- accf90: Accuracy (reliability) for a large number of animals (available only under some conditions)
Genomic Analysis
- PreGSF90: Pre-analysis of genomic programs
faq.1338212719.txt.gz · Last modified: 2024/03/25 18:22 (external edit)