Differences

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--- start [2012/05/08 17:05] – created shogo
+++ start [2016/05/26 11:29] – yutaka
@@ Line 1: / Line 1: @@
-FAQ for BLUPF90 programs
+====== BLUPF90 Family of Programs  =====
-Input files
+=== now with support for genomic selection ===
-    data
+//Ignacy Misztal and collaborators, University of Georgia//
-    pedigree
-Data preparation program
+BLUPF90 family of programs is a collection of software in  Fortran 90/95  for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a programming language.  For general description, see a [[https://journal.interbull.org/index.php/ib/article/view/470/468|paper]] from the CCB'99 workshop  or see a {{28-07.pdf|paper}} on BGF90 at 7th WCGALP.
+For variance component estimation, the family offers choices for simple and complicated models; see paper {{reliable_computing.pdf| “Reliable computing in estimation of variance components” }}. From 2009 the programs are successively modified for genomic selection using a {{single_step_8.pdf|single-step}} approach (or ssGBLUP) by Ignacio Aguilar and Shogo Tsuruta.
-    renumf90 (ver 1.92) read me
+For support, join [[https://groups.yahoo.com/neo/groups/blupf90/info|blupf90]] group at yahoo.com.
-    examples
-Frequent mistakes in a parameter file for BLUPF90 programs
+====== Headline ======
-    parameter files for various models
+   * [[History]]
-    examples
+   * [[Modules]]
+   * [[Application programs]]
-REML
+   * [[Documentation]]
+   * [[Condition of use]]
-    remlf90 (ver 1.76) read me: EM algorithm - PDF
+   * [[Distribution]]
-    airemlf90 (ver 1.99) read me: Average Information REML + REMLF90 - Standard Errors (PDF)
+   * [[Support]]
+   * [[FAQ]]
-Gibbs sampling
+   * [[Tricks]]
-OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances
+   * [[Course materials - from UGA 2012]]
+   * [[Course materials - from UGA 2014]]
-    gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits
+   * [[Course information - UGA 2016]] **Updated** :!:
-    gibbs2f90 (ver 1.76) read me
-    gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances
-    thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model
-Post-Gibbs Analysis
-    postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs)
-BLUP
-    blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF
-    blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions)
-    cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions)
-Accuracy
-    accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions)
-Genomic Analysis
-    preGSf90 (ver 1.6) read me: For a pre-analysis of genomic programs