start
Differences
This shows you the differences between two versions of the page.
Next revision | Previous revisionNext revisionBoth sides next revision | ||
start [2012/05/08 17:05] – created shogo | start [2019/03/28 18:41] – [Headline] yutaka | ||
---|---|---|---|
Line 1: | Line 1: | ||
- | FAQ for BLUPF90 | + | ====== |
- | Input files | + | === Now with support for genomic selection === |
- | data | + | //Ignacy Misztal and collaborators, |
- | pedigree | + | |
- | Data preparation program | + | BLUPF90 family of programs is a collection of software in Fortran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a programming language. |
+ | |||
+ | For variance component estimation, the family offers choices for simple and complicated models; see paper {{reliable_computing.pdf| “Reliable computing in estimation of variance components” }}. From 2009 the programs are successively modified for genomic selection using a {{single_step_8.pdf|single-step}} approach (or ssGBLUP) by Ignacio Aguilar and Shogo Tsuruta. | ||
- | renumf90 (ver 1.92) read me | + | For support, join [[https:// |
- | examples | + | |
- | Frequent mistakes in a parameter file for BLUPF90 programs | + | === Troubleshooting === |
- | parameter files for various models | + | :!: If the software crashes with segmentation fault, please change settings in your operating system. |
- | | + | See [[faq.segfault|FAQ: |
- | REML | + | ====== Headline ====== |
- | remlf90 (ver 1.76) read me: EM algorithm - PDF | + | * [[History]] |
- | | + | * [[Modules]] |
+ | * [[Application programs]] | ||
+ | * [[Documentation]] | ||
+ | * [[Condition of use]] | ||
+ | * [[Distribution|Distribution / Download]] | ||
+ | * [[Support]] | ||
+ | * [[FAQ]] | ||
+ | * [[Tricks]] | ||
+ | * [[To Do]] | ||
+ | * [[Courses]] | ||
+ | * [[data:Sample data]] | ||
+ | * [[undoc:Undocumented options]] | ||
- | Gibbs sampling | ||
- | OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances | ||
- | |||
- | gibbs1f90 (ver 1.42) read me: Faster than GIBBS2F90 without missing traits | ||
- | gibbs2f90 (ver 1.76) read me | ||
- | gibbs3f90 (ver 1.77) read me: Heterogeneous residual variances | ||
- | thrgibbs1f90(b) (ver 2.100) read me: Threshold model + linear model | ||
- | |||
- | Post-Gibbs Analysis | ||
- | |||
- | postgibbsf90 (ver 3.02) read me: Needs Gibbs samples and gnuplot (use postgibbsold for old Gibbs sampler programs) | ||
- | |||
- | BLUP | ||
- | |||
- | blupf90 (ver 1.45) read me: SOR, FSPAK or PCG - PDF | ||
- | blup90iod2 (ver 3.78) read me: For a large number of equations (available only under some conditions) | ||
- | cblup90iod2 (ver 3.16) read me: Threshold model + linear model for a large number of equations (available only under some conditions) | ||
- | |||
- | Accuracy | ||
- | |||
- | accf90 : (ver 1.63) read me: Accuracy (reliability) for a large number of animals (available only under some conditions) | ||
- | |||
- | Genomic Analysis | ||
- | |||
- | preGSf90 (ver 1.6) read me: For a pre-analysis of genomic programs |
start.txt · Last modified: 2024/04/04 13:54 by dani