When
March 9, Dunedin, New Zealand
From 9:00am to 5:00pm

BLUPF90 programs BLUPF90 Download. Choose the binary folder appropriate for your OS.

It allows one to access an account on a Unix or other multi-user system from a PC. Pseudo-emulator of Linux environment, so Linux commands work.

MobaXterm Enhanced terminal for Windows with X11 server, tabbed SSH client, network tools, and more.

Editor Notepad++ Notepad++ 64-bit Installer

BLUPF90 Manual

1) The preferred OS for the course is Linux. If you want to use Windows, please download MobaXterm so that you can use some Linux bash commands inside Windows.

2) If you have problems executing the BLUPF90 binaries in Windows, it may be related to the lack of OpenMP libraries. If you receive a message like “The program can't start because libiomp5md.dll is missing from your computer…”, please install the Redistributable Libraries by Intel Corporation.

1. Access the official web site by Intel.
2. Download Intel® Fortran Compiler Runtime for Windows (2022.2.0 / 2021.7.0).
3. Open the zip-file and follow the installer instructions.
4. Done. Open a new terminal window and run BLUPF90 programs as usual.

3) If you have problems executing the BLUPF90 binaries in Linux or MacOS, change the permission for the file using the following command

chmod a+x <filename>

or

chmod 777 <filename>

4) If you try to run any program and get a message about segmentation fault, this is because the program tried to access an inappropriate memory area or accessed it abnormally.

When the program fails (crashes) without any messages, most likely, a segmentation fault has occurred.

There are possible reasons for this error.

• Missing configuration in your computing environment
• Running out of free memory
• A bug in the program

Please type the following command before running the BLUPF90 programs.

ulimit -s unlimited

Day 3

• Introduction to blupf90 family
• QC of SNP data and creation of genomic matrices with preGSf90
• Data for Lab_day3
• Lab_day3
• script