faq.renum_example
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Table of Contents
Models
Animal model
DATAFILE data.test TRAITS 3 FIELDS_PASSED TO OUTPUT 5 6 WEIGHT(S) RESIDUAL VARIANCE 5 EFFECT 1 cross alpha EFFECT 2 cross alpha RANDOM animal FILE test.ped FILE_POS 1 2 3 0 0 PED_DEPTH 5 (CO)VARIANCES 1
Multiple trait animal model
DATAFILE data.test TRAITS 3 4 FIELDS_PASSED TO OUTPUT 5 6 WEIGHT(S) RESIDUAL VARIANCE 5 2 2 4 EFFECT 1 1 cross alpha EFFECT 2 2 cross alpha RANDOM animal FILE test.ped FILE_POS 1 2 3 0 0 PED_DEPTH 5 (CO)VARIANCES 2 1 1 2
Animal model with UPG
DATAFILE data.test TRAITS 3 FIELDS_PASSED TO OUTPUT 5 6 WEIGHT(S) RESIDUAL VARIANCE 5 EFFECT 1 cross alpha EFFECT 2 cross alpha RANDOM animal FILE test.ped FILE_POS 1 2 3 0 4 PED_DEPTH 5 GEN_INT 1 3 10 UPG_TYPE yob 1990 1995 2000 2005 (CO)VARIANCES 1
Repeatability model 1
DATAFILE data.test TRAITS 3 4 FIELDS_PASSED TO OUTPUT 5 6 WEIGHT(S) RESIDUAL VARIANCE 5 2 2 4 EFFECT 1 1 cross alpha EFFECT 2 2 cross alpha RANDOM animal FILE test.ped FILE_POS 1 2 3 0 0 PED_DEPTH 5 (CO)VARIANCES 2 1 1 2 EFFECT 2 2 cross alpha RANDOM diagonal (CO)VARIANCES_PE 2 1 1 2
Repeatability model 2
DATAFILE data.test TRAITS 3 4 FIELDS_PASSED TO OUTPUT 5 6 WEIGHT(S) RESIDUAL VARIANCE 5 2 2 4 EFFECT 1 1 cross alpha EFFECT 2 2 cross alpha RANDOM animal OPTIONAL pe FILE test.ped FILE_POS 1 2 3 0 0 PED_DEPTH 5 (CO)VARIANCES 2 1 1 2 (CO)VARIANCES_PE 2 1 1 2
Repeatability model 2
DATAFILE data.test TRAITS 3 4 FIELDS_PASSED TO OUTPUT 5 6 WEIGHT(S) RESIDUAL VARIANCE 5 2 2 4 EFFECT 1 1 cross alpha EFFECT 2 2 cross alpha RANDOM animal OPTIONAL pe FILE test.ped FILE_POS 1 2 3 0 0 PED_DEPTH 5 (CO)VARIANCES 2 1 1 2 (CO)VARIANCES_PE 2 1 1 2
Maternal effect model
DATAFILE data.test TRAITS 3 4 FIELDS_PASSED TO OUTPUT 5 6 WEIGHT(S) RESIDUAL VARIANCE 5 2 2 4 EFFECT 1 1 cross alpha EFFECT 2 2 cross alpha RANDOM animal OPTIONAL mat FILE test.ped FILE_POS 1 2 3 0 0 PED_DEPTH 5 (CO)VARIANCES 2 1 1 1 1 2 1 1 1 1 2 1 1 1 1 2
faq.renum_example.1539871212.txt.gz · Last modified: 2024/03/25 18:22 (external edit)