renumf90 gibbs2f90 postgibbsf90
renumf90 blup90iod accf90
renumf90 blupf90 postGSf90
renumf90 preGSf90 blupf90
renumf90 preGSf90 blup90iod
All above analyzes can avoid using renumf90 if the input data is renumbered consecutively from 1, as is usually the case with simulation data.
Use of RENUMF90 usually guarantees consistency of data, pedigree, parameter and genomic files for later programs. This program: - renumber effects consecutively, - prunes the pedigree and does some quality control, - with genomic option, reorders genomic IDs, - writes parameter file (renf90), data, pedigree, and possibly genomic files.
After renumf90, the parameter file (renf90) may have to be edited for models not directly supported by renumf90.
With genomic analyses, no changes to the sequence are required as the genomic preprocessor program called preGSf90 is run automatically by application programs. PreGSf90 needs to be run explicitly for testing, when there is need to output some files, and when application programs need to read files created by preGSF90 rather than being recreated every time when the applications programs are run.