User Tools

Site Tools


readme.pcg2r

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

readme.pcg2r [2015/05/22 17:08] (current)
Line 1: Line 1:
 +====== BLUP90IOD2R ======
 +
 +===== Summary =====
 +The GIBBS3F90-type heterogeneous residual variance version of BLUP90IOD2.
 +\\
 +See BLUP90IOD2 for other options.
 +\\
 +See PREGSF90 with genotypes (SNP) for options.
 +\\
 +
 +====== Options ======
 +<​file>​
 +   ​OPTION hetres_int col nlev
 +</​file>​
 +where col is column in the data file that selects which residual (co)variance to select, and nlev is the maximum number of levels. Different residual (co)variances need to be numbered consecutively starting from 1.
 +
 +<​file>​
 +OPTION hetres_int 5 10
 +x11 x12 x13
 +x21 x22 x23
 +x31 x32 x33
 +y11 y12 y13
 +y21 y22 y23
 +y31 y32 y33
 +:
 +:
 +:
 +z11 z12 z13
 +z21 z22 z23
 +z31 z32 z33
 +</​file>​
 +The position "​5"​ to identify the interval in the data file and the number of intervals "​10"​ for heterogeneous residual variances.
 +Give residual covariances for each interval (e.g., x, y, and z).
 +\\
  
readme.pcg2r.txt ยท Last modified: 2015/05/22 17:08 (external edit)