faq
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Table of Contents
FAQ for BLUPF90 programs
Frequent mistakes in data, pedigree, and parameter files for BLUPF90 programs
Data preparation program
REML
- remlf90: EM algorithm REMLF90 (PDF)
- airemlf90: Average Information REML + REMLF90 Standard Errors (PDF)
Gibbs sampler
OPTIONs for priors and degrees of belief, for restarting from the last sampling, and for storing solutions and SD with or without fixed variances
- gibbs1f90: Faster than GIBBS2F90 without missing traits
- gibbs3f90: Heterogeneous residual variances
- thrgibbs1f90: Threshold model + linear model
Post-Gibbs Analysis
- postgibbsf90: Statistics and graphics for post-Gibbs analysis (use postgibbsold for old Gibbs sampler programs)
BLUP
- blupf90: BLUP with SOR, FSPAK or PCG BLUPF90 (PDF)
- blup90iod2: BLUP for a large number of equations (available only under some conditions)
- cblup90iod: BLUP with threshold model + linear model for a large number of equations (available only under some conditions)
Accuracy
- accf90: Accuracy (reliability) for a large number of animals (available only under some conditions)
Genomic Analysis
- PreGSF90: Pre-analysis of genomic programs
faq.1338381747.txt.gz · Last modified: 2024/03/25 18:22 (external edit)