faq.renum_example
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| faq.renum_example [2018/10/18 14:00] – [Repeatability model 2] shogo | faq.renum_example [2024/03/25 18:22] (current) – external edit 127.0.0.1 | ||
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| Line 159: | Line 159: | ||
| 1 2 | 1 2 | ||
| </ | </ | ||
| - | ===== Repeatability | + | ===== Random regression |
| < | < | ||
| DATAFILE | DATAFILE | ||
| - | data.test | + | rrm.dat |
| TRAITS | TRAITS | ||
| - | 3 4 | + | 9 |
| FIELDS_PASSED TO OUTPUT | FIELDS_PASSED TO OUTPUT | ||
| - | 5 6 | + | |
| WEIGHT(S) | WEIGHT(S) | ||
| - | RESIDUAL VARIANCE | + | RESIDUAL_VARIANCE |
| - | 5 2 | + | 1 |
| - | 2 4 | + | |
| EFFECT | EFFECT | ||
| - | 1 1 cross alpha | + | 7 cross alpha |
| EFFECT | EFFECT | ||
| - | 2 2 cross alpha | + | 2 cov |
| + | EFFECT | ||
| + | 3 cov | ||
| + | EFFECT | ||
| + | 4 cov | ||
| + | EFFECT | ||
| + | 5 cov | ||
| + | EFFECT | ||
| + | 6 cross alpha | ||
| RANDOM | RANDOM | ||
| animal | animal | ||
| Line 181: | Line 188: | ||
| pe | pe | ||
| FILE | FILE | ||
| - | test.ped | + | rrm.ped |
| - | FILE_POS | + | RANDOM_REGRESSION |
| - | 1 2 3 0 0 | + | data |
| - | PED_DEPTH | + | RR_POSITION |
| - | 5 | + | 2 3 4 5 |
| + | </ | ||
| + | < | ||
| + | rrm.dat | ||
| + | | ||
| + | 2 -0.77778 0.40741 -0.00960 -0.29249 | ||
| + | 3 -0.55556 -0.03704 0.40466 -0.36565 | ||
| + | 4 -0.33333 -0.33333 0.40741 0.01235 | ||
| + | | ||
| + | 6 0.11111 -0.48148 -0.16324 0.32937 | ||
| + | 7 0.33333 -0.33333 -0.40741 0.01235 | ||
| + | 8 0.55556 -0.03704 -0.40466 -0.36565 | ||
| + | 9 0.77778 0.40741 0.00960 -0.29249 | ||
| + | 10 1.00000 1.00000 1.00000 1.00000 | ||
| + | : | ||
| + | : | ||
| + | : | ||
| + | : | ||
| + | : | ||
| + | : | ||
| + | </ | ||
| + | < | ||
| + | rrm.ped | ||
| + | 1 0 0 | ||
| + | 2 0 0 | ||
| + | 3 0 0 | ||
| + | 4 0 0 | ||
| + | 5 1 0 | ||
| + | 6 1 4 | ||
| + | 7 2 0 | ||
| + | 8 2 4 | ||
| + | 9 2 0 | ||
| + | 10 3 5 | ||
| + | </ | ||
| + | < | ||
| + | renf90.par | ||
| + | DATAFILE | ||
| + | | ||
| + | NUMBER_OF_TRAITS | ||
| + | 1 | ||
| + | NUMBER_OF_EFFECTS | ||
| + | 13 | ||
| + | OBSERVATION(S) | ||
| + | 1 | ||
| + | WEIGHT(S) | ||
| + | |||
| + | EFFECTS: POSITIONS_IN_DATAFILE NUMBER_OF_LEVELS TYPE_OF_EFFECT[EFFECT NESTED] | ||
| + | | ||
| + | 7 1 cov | ||
| + | 8 1 cov | ||
| + | 9 1 cov | ||
| + | 10 1 cov | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | RANDOM_RESIDUAL VALUES | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | renadd06.ped | ||
| (CO)VARIANCES | (CO)VARIANCES | ||
| - | 2 1 | + | 1.0000000 |
| - | 1 2 | + | 0.1000000 |
| - | (CO)VARIANCES_PE | + | |
| - | 2 1 | + | |
| - | 1 2 | + | |
| + | 10 11 12 13 | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | (CO)VARIANCES | ||
| + | | ||
| + | | ||
| + | 0.1000000 | ||
| + | 0.1000000 | ||
| </ | </ | ||
| + | |||
| ===== Maternal effect model ===== | ===== Maternal effect model ===== | ||
| < | < | ||
faq.renum_example.txt · Last modified: 2024/03/25 18:22 by 127.0.0.1