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course_materials_-_uga_2022

General information

When
May 16 - June 3, Athens, GA
From 9:00am to 5:00pm

Course Venue
Department of Animal and Dairy Science
425 River Road, Athens GA 30602

The classes and labs will be on the first floor
Morning lectures: Room #114
Lunch: Room #136
Afternoon labs: Room #116

Utility Programs & BLUPF90 download

BLUPF90 programs BLUPF90 Download

QMSim genomic data simulator QMSim Download

Display server

It allows one to use Linux graphical applications remotely:

Xming Xming X Window System Server - for Windows

XQuatz X Quartz - for Mac

Terminal emulators for Windows users

It allows one to access an account on a Unix or other multi-user system from a PC:

Putty 64-bit: putty.exe (the SSH and Telnet client itself)

MobaXterm Enhanced terminal for Windows with X11 server, tabbed SSH client, network tools, and more.

File transfer

It is used to transfer files from a server to a PC and vice-versa:

WinSCP WinSCP File Transfer

Enhanced editor for Windows users

Editor Notepad++ Notepad++ 64-bit Installer


Best practices in Fortran programming

Click here for a short manual about Fortran performance best practices.


Course Materials

Files

Week 2

Day 9

Day 10

Week 3

Day 11

Day 12


Day 13

Day 14

General Info

1) The preferred OS is Linux. All students will have access to a Linux server during the course.

3) If you have problems executing the BLUPF90 binaries in Linux or MacOS, change the permission for the file using the following command

chmod a+x <filename>

or

chmod 777 <filename>

4) If you try to run any program and get a message about segmentation fault, this is because the program tried to access an inappropriate memory area or accessed it abnormally.

When the program fails (crashes) without any messages, most likely, a segmentation fault has occurred.

There are possible reasons for this error.

  • Missing configuration in your computing environment
  • Running out of free memory
  • A bug in the program

Please type the following command before running the BLUPF90 programs.

ulimit -s unlimited


Pictures

course_materials_-_uga_2022.txt · Last modified: 2022/06/06 23:01 by dani