BLUPF90

BLUPF90 programs BLUPF90 Download

Xming Xming X Window System Server - for Windows

XQuatz X Quartz - for Mac

MobaXterm Enhanced terminal for Windows with X11 server, tabbed SSH client, network tools and more

Putty 64-bit: putty.exe (the SSH and Telnet client itself)

WinSCP WinSCP File Transfer

Editor Notepad++ Notepad++ 64-bit Installer

1) The preferred OS for the course is Linux. If you want to use Windows, please download MobaXterm so that you can use some Linux bash commands inside Windows.

2) If you have problems executing the BLUPF90 binaries in Windows, it may be related to the lack of OpenMP libraries. Click here to solve this issue.

3) If you have problems executing the BLUPF90 binaries in Linux or MacOS, change the permission for the file using the following command

chmod a+x <filename>

or

chmod 777 <filename>

4) If you try to run any program and get a message about segmentation fault, this is because the program tried to access an inappropriate memory area or accessed it abnormally.

When the program fails (crashes) without any messages, most likely, a segmentation fault has occurred.

There are possible reasons for this error.

• Missing configuration in your computing environment
• Running out of free memory
• A bug in the program

Please type the following command before running the BLUPF90 programs.

ulimit -s unlimited

Day 1

• Introduction to blupf90 family

• Lab1

• Files for Lab1

• Script for lab1
  

Day2

• Introduction to Genomics

• preGSf90 Quality Control

• preGSf90 Genomic setup

• Lab2

• Files for Lab2

• Slides for Lab2

• Script for lab2
  

Day3

• Weighted ssGBLUP and ssGWAS

• Metafounders in ssGBLUP

• Lab3

• Files for Lab3

• Slides for Lab3

• Files for Lab3 - Metafounders

• Script for lab3
  

Lourenco et al. (2020) Single-Step Genomic Evaluations from Theory to Practice: Using SNP Chips and Sequence Data in BLUPF90

Legarra et al. (2021) Bases for Genomic Prediction