University of Pretoria, South Africa

3 - 7 October 2016

Five-day course in genomic analyses with emphasis on single-step GBLUP

Taught by Ignacy Misztal (University of Georgia, USA) and Ignacio Aguilar (INIA, Uruguay)

Windows BLUPF90 binary programs and GNUPLOT blupf90_win.zip

Intel's Redistributable Libraries - see FAQ for more information ww_ifort_redist_ia32_2016.3.207.zip

Editor Notepad++ npp.7.installer.zip

Outline

BLUPF90 Manual

Misztal 2011, JABG Editorial

Misztal 2016, JABG Editorial

Introduction to renumf90

Creation and handling genomic relationship matrix and forming Single-Step mixed model equations

PreGSf90 Quality Control

PostGSf90 Single-Step GWAS

Day 1

• ex_mat_mt.zip

Day 2

• ex_thr.zip

• beef_renum.zip

• rrm_renum.zip

Day 3

• ssgblup.zip

Day 4

• pregsqc.zip

Day 5

• postgs.zip

Day 1

Day 2 Renumf90 parameter file for Beef example

DAY 3

DAY 4

DAY 5