BLUPF90

When
November 16 - 17, Viçosa, Brazil
From 9:00am to 5:00pm

BLUPF90 programs BLUPF90 Download

It allows one to use Linux graphical applications remotely:

Xming Xming X Window System Server - for Windows

XQuatz X Quartz - for Mac

It allows one to access an account on a Unix or other multi-user system from a PC:

Putty 64-bit: putty.exe (the SSH and Telnet client itself)

MobaXterm Enhanced terminal for Windows with X11 server, tabbed SSH client, network tools, and more.

It is used to transfer files from a server to a PC and vice-versa:

WinSCP WinSCP File Transfer

Editor Notepad++ Notepad++ 64-bit Installer

BLUPF90 Manual

1) The preferred OS for the course is Linux. If you want to use Windows, please download MobaXterm so that you can use some Linux bash commands inside Windows.

2) If you have problems executing the BLUPF90 binaries in Windows, it may be related to the lack of OpenMP libraries. Click here to solve this issue.

3) If you have problems executing the BLUPF90 binaries in Linux or MacOS, change the permission for the file using the following command

chmod a+x <filename>

or

chmod 777 <filename>

4) If you try to run any program and get a message about segmentation fault, this is because the program tried to access an inappropriate memory area or accessed it abnormally.

When the program fails (crashes) without any messages, most likely, a segmentation fault has occurred.

There are possible reasons for this error.

• Missing configuration in your computing environment
• Running out of free memory
• A bug in the program

Please type the following command before running the BLUPF90 programs.

ulimit -s unlimited

Day 1

• Introduction to blupf90 family

• Introduction to genomics

• Prediction Accuracy - Validation

• Lab1

• Files for Lab1

Day 2

• Types of Accuracy

• Lab2

• Files for Lab2

• SNP effects from ssGBLUP

Lourenco et al. (2020) Single-Step Genomic Evaluations from Theory to Practice: Using SNP Chips and Sequence Data in BLUPF90

Legarra et al. (2021) Bases for Genomic Prediction